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Update README.md
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README.md
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---
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license: mit
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---
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license: mit
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language:
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- en
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pretty_name: ABX-CT-010 Cycling Strategy Collapse
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tags:
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- antibiotics
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- stewardship
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- cycling
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- resistance
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- mdr
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- tabular
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task_categories:
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- tabular-classification
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size_categories:
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- n<1k
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---
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ABX-CT-010 Cycling Strategy Collapse
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Purpose
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Detect when antibiotic rotation stops controlling resistance.
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Core pattern
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- stress_index high
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- cycle_exposure_index high
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- burden_gap stays high across different cycle drugs
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- mdr_marker rises and stays high
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- later clinical_failure_flag appears
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Files
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- data/train.csv
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- data/test.csv
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- scorer.py
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Schema
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Each row is one cycle timepoint in a within series rotation history.
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Required columns
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- row_id
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- series_id
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- timepoint_d
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- cycle_id
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- drug_in_cycle
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- stress_index
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- cycle_exposure_index
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- population_resistance_burden
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- expected_burden_under_cycling
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- burden_gap
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- mdr_marker
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- mic_to_active_drug_fold_vs_baseline
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- clinical_failure_flag
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- source_type
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- cycling_collapse_signal
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- earliest_cycling_collapse
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Labels
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- cycling_collapse_signal
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- 1 for rows at or after first confirmed collapse point
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- earliest_cycling_collapse
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- 1 only for the first collapse row in that series
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Scorer logic in v1
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- candidate collapse point
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- stress_index at least 0.80
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- cycle_exposure_index at least 0.80
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- burden_gap at least 0.25 at two consecutive points
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- consecutive points must be different drug_in_cycle values
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- mdr_marker at least 0.60 and up at least 0.10 vs baseline
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- exclude burden_gap spike then snapback artifacts
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- confirmation
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- clinical_failure_flag equals 1 later in series
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Evaluation
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Run
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- python scorer.py --path data/test.csv
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