import numpy as np import torch import pytorch_lightning as pl from torch import optim, nn import torch.nn.functional as F import wandb import matplotlib.pyplot as plt import math import os from scipy.io import loadmat class LpLoss(object): def __init__(self, d=2, p=2, size_average=True, reduction=True): super(LpLoss, self).__init__() assert d > 0 and p > 0 self.d = d self.p = p self.reduction = reduction self.size_average = size_average def abs(self, x, y): num_examples = x.size()[0] h = 1.0 / (x.size()[1] - 1.0) all_norms = (h**(self.d/self.p))*torch.norm(x.view(num_examples,-1) - y.view(num_examples,-1), self.p, 1) if self.reduction: if self.size_average: return torch.mean(all_norms) else: return torch.sum(all_norms) return all_norms def rel(self, x, y): num_examples = x.size()[0] diff_norms = torch.norm(x.reshape(num_examples,-1) - y.reshape(num_examples,-1), self.p, 1) y_norms = torch.norm(y.reshape(num_examples,-1), self.p, 1) if self.reduction: if self.size_average: return torch.mean(diff_norms/y_norms) else: return torch.sum(diff_norms/y_norms) return diff_norms/y_norms def __call__(self, x, y): return self.rel(x, y) class RRMSE(object): def __init__(self, ): super(RRMSE, self).__init__() def __call__(self, x, y): num_examples = x.size()[0] norm = torch.norm(x.view(num_examples,-1) - y.view(num_examples,-1), 2 , 1)**2 normy = torch.norm( y.view(num_examples,-1), 2 , 1)**2 mean_norm = torch.mean((norm/normy)**(1/2)) return mean_norm class SpectralConv2d_born(nn.Module): ''' Input: x: batch,in, x,y x_eps: batch,in,x,y Output: batch,out,x,y ''' def __init__(self, in_channels, out_channels, modes1, modes2): super(SpectralConv2d_born, self).__init__() """ 2D Fourier layer. It does FFT, linear transform, and Inverse FFT. """ self.in_channels = in_channels self.out_channels = out_channels self.modes1 = modes1 # Number of Fourier modes to multiply, at most floor(N/2) + 1 self.modes2 = modes2 self.scale = 1 / (in_channels * out_channels) self.weights1 = nn.Parameter( self.scale * torch.rand(in_channels, out_channels, self.modes1, self.modes2,2, dtype=torch.float32) ) self.weights2 = nn.Parameter( self.scale * torch.rand(in_channels, out_channels, self.modes1, self.modes2,2, dtype=torch.float32) ) def compl_mul2d(self,input, weights): #print(input.shape,weights.shape) real = torch.einsum('bixy,ioxy->boxy',input[...,0],weights[...,0])-torch.einsum('bixy,ioxy->boxy',input[...,1],weights[...,1]) comp = torch.einsum('bixy,ioxy->boxy',input[...,0],weights[...,1])+torch.einsum('bixy,ioxy->boxy',input[...,1],weights[...,0]) output = torch.cat((real.unsqueeze(-1),comp.unsqueeze(-1)),dim = -1) return output # Complex multiplication # def compl_mul2d(self, input, weights): # # (batch, in_channel, x,y ), (in_channel, out_channel, x,y) -> (batch, out_channel, x,y) # return torch.einsum("bixyz,ioxyz->boxyz", input, weights) def forward(self, x, x_eps): batchsize = x.shape[0] # Compute Fourier coeffcients up to factor of e^(- something constant) x_ft = torch.view_as_real(torch.fft.rfft2(x * x_eps)) # Multiply relevant Fourier modes out_ft = torch.zeros( batchsize, self.out_channels, x.size(-2), x.size(-1) // 2 + 1,2, dtype=torch.float32, device=x.device ) out_ft[:, :, : self.modes1, : self.modes2] = self.compl_mul2d( x_ft[:, :, : self.modes1, : self.modes2,:], self.weights1 ) out_ft[:, :, -self.modes1 :, : self.modes2] = self.compl_mul2d( x_ft[:, :, -self.modes1 :, : self.modes2,:], self.weights2 ) # Return to physical space x = torch.fft.irfft2(torch.view_as_complex(out_ft), s=(x.size(-2), x.size(-1))) return x class FNO_step(nn.Module): def __init__(self, width, modes1, modes2 ): super(FNO_step, self).__init__() self.modes1 = modes1 # Truncate mode of FT in x self.modes2 = modes2 # Truncate mode of FT in y self.width = width #image size self.conv0 = SpectralConv2d_born(self.width, self.width, self.modes1, self.modes2) self.w0 = nn.Conv2d(self.width, self.width, 1) self.w1 = nn.Conv2d(self.width, self.width, 1) self.bn = nn.BatchNorm2d(self.width, eps=0, momentum=0.5, affine=True) #self.coef = nn.Parameter(torch.ones(1)).cuda() def forward(self,input): # Qin Jiu Shao version x,v_v,v_q,x_0, v_mq= input x_n = x.clone() x = self.conv0(x, v_v) x = x * v_mq+ v_q * x_n x = self.w1(F.leaky_relu(self.w0(x))) x = F.leaky_relu(x) x = x + x_0 x = self.bn(x) return [x,v_v,v_q,x_0,v_mq] class S2NO_step_wrap(nn.Module): def __init__(self, model,width): super(S2NO_step_wrap, self).__init__() self.model = model #self.DC = DC1(self.width, 8, self.width, 3) self.bn = nn.BatchNorm2d(width, eps=0, momentum=0.5, affine=True) #self.ln = torch.nn.LayerNorm(489, eps=1e-05, elementwise_affine=True) def forward(self,input): # Qin Jiu Shao version #x = self.DC(x) [x,v_v,v_q,x_0] = self.model(input) x = self.bn(x) return [x,v_v,v_q,x_0] class S2NO_pretrain(pl.LightningModule): def __init__(self,width=40, modes1=128, modes2=128, layer_num=7, padding = 6, dim_input = 1, source_type = 'theta', loss = "rel_l2", learning_rate = 1e-2, step_size= 100, gamma= 0.5, weight_decay= 1e-5, F_feature = False, add_term = False, eta_min = 2e-4, val_exp = False, src_path_breast = '', gt_path_breast = '', src_path_arm = '', gt_path_arm = '', src_path_limb = '', gt_path_limb = '' ): super().__init__() self.with_grid = True if self.with_grid == True: dim_input +=2 self.source_type = source_type if self.source_type == 'source': dim_input +=2 elif self.source_type == 'theta': dim_input +=2 self.padding = padding self.learning_rate = learning_rate self.step_size = step_size self.gamma = gamma self.weight_decay = weight_decay self.eta_min = eta_min if loss == 'l1': self.criterion = nn.L1Loss() elif loss == 'l2': self.criterion = nn.MSELoss() self.criterion_val = LpLoss() elif loss == "rel_l2": self.criterion =LpLoss() self.criterion_val = RRMSE() self.modes1 = modes1 # Truncate mode of FT in x self.modes2 = modes2 # Truncate mode of FT in y self.width = width #image size self.padding = padding # pad the domain if input is non-periodic self.fc_c1 = nn.Linear(3, self.width) # input channel is 3: (c(x, y), x, y) self.fc_c2 = nn.Linear(self.width, self.width) self.fc_c3 = nn.Linear(3, self.width) # input channel is 3: (c(x, y), x, y) self.fc_c4 = nn.Linear(self.width, self.width) self.fc_0 = nn.Linear(dim_input, self.width) # input channel is 4: (s(x,y),c(x, y), x, y) self.layer_num = layer_num self.fno_step = [] for i in range(layer_num): self.fno_step.append(FNO_step(self.width,self.modes1,self.modes2).to(self.device)) self.net =nn.Sequential(*self.fno_step) self.F_feature = F_feature self.add_term = add_term self.fc1 = nn.Linear(self.width, 256) self.fc2 = nn.Linear(256, 2) self.val_iter = 0 self.bn = nn.BatchNorm2d(self.width, eps=0, momentum=0.5, affine=True, track_running_stats=True) #self.field = torch.tensor(np.load('/root/Fine-tuning-NOs-master/models/field.npy')) self.val_exp = val_exp self.save_path = None self.exp_name = None self.src_path_breast = src_path_breast self.gt_path_breast = gt_path_breast self.src_path_arm = src_path_arm self.src_path_limb = src_path_limb self.gt_path_arm = gt_path_arm self.gt_path_limb = gt_path_limb if self.val_exp: data = loadmat('/gpfs/share/home/2201213309/neuralFWI/breast_generator0822/exp_matcode/breast0718.mat')['image'] data = (1500/data-1)*30 sos = torch.tensor(data,dtype=torch.float).view(1,480,480,1) sos = sos.repeat(64,1,1,1) self.sos_exp_breast = sos index_2 = np.arange(0,64).reshape(64,1,1,1) src = np.load(self.src_path_breast)[:,:,:]*2e-3 src = np.concatenate((np.real(src)[:,:,:,np.newaxis],np.imag(src)[:,:,:,np.newaxis]),axis = -1) self.src_exp_breast = torch.tensor(src,dtype=torch.float).view(64,480,480,2) gt_np = loadmat(self.gt_path_breast)['u_all_single'] gt = torch.view_as_real(torch.tensor(gt_np)) self.gt_breast = torch.tensor(gt) #data = loadmat('/gpfs/share/home/2201213309/neuralFWI/arm_generator1020/code1020/arm450.mat')['data'] data = loadmat('/gpfs/share/home/2201213309/neuralFWI/arm_generator1020/code1020/armcbs1022.mat')['speed'] data = (1500/data-1)*30 sos = torch.tensor(data,dtype=torch.float).view(1,480,480,1) sos = sos.repeat(64,1,1,1) self.sos_exp_arm = sos index_2 = np.arange(0,64).reshape(64,1,1,1) src = np.load(self.src_path_arm)[:,:,:]*2e-3 #theta = (index_2/64*2*np.pi)*np.ones((1,480,480,1)) src = np.concatenate((np.real(src)[:,:,:,np.newaxis],np.imag(src)[:,:,:,np.newaxis]),axis = -1) self.src_exp_arm = torch.tensor(src,dtype=torch.float).view(64,480,480,2) gt_np = loadmat(self.gt_path_arm)['u_all_single'] gt = torch.view_as_real(torch.tensor(gt_np)) self.gt_arm = torch.tensor(gt) #data = loadmat('/gpfs/share/home/2201213309/neuralFWI/limb_generata0703/code0703/limb0718.mat')['image'] data = loadmat('/gpfs/share/home/2201213309/neuralFWI/limb_regenerator_1031/code1031/limb0718.mat')['image'] data = (1500/data-1)*30 sos = torch.tensor(data,dtype=torch.float).view(1,480,480,1) sos = sos.repeat(64,1,1,1) self.sos_exp_limb = sos index_2 = np.arange(0,64).reshape(64,1,1,1) src = np.load(self.src_path_limb)[:,:,:]*2e-3 #theta = (index_2/64*2*np.pi)*np.ones((1,480,480,1)) src = np.concatenate((np.real(src)[:,:,:,np.newaxis],np.imag(src)[:,:,:,np.newaxis]),axis = -1) self.src_exp_limb = torch.tensor(src,dtype=torch.float).view(64,480,480,2) gt_np = loadmat(self.gt_path_limb)['u_all_single'] gt = torch.view_as_real(torch.tensor(gt_np)) self.gt_limb = torch.tensor(gt) def forward(self,sos,src): ''' x: batch,x,y,channel=3 (c(x),s(x)) ''' if self.source_type == 'theta': src_input = src[:,:,:,:] elif self.source_type == 'source': src_input = src[:,:,:,0:2] # x = torch.cat((sos, src_input), dim=-1) x_1 = sos field = src[...,0:2].clone() grid = self.get_grid(x_1.shape, x_1.device, field) x_0 = torch.cat((x_1, grid,src_input), dim=-1) x_c = torch.cat((x_1, grid), dim=-1) v_0 = self.fc_0(x_0) v_0 = v_0.permute(0, 3, 1, 2) if self.padding >=1: v_0 = F.pad(v_0, [0, self.padding, 0, self.padding]) v_v = self.fc_c2(F.tanh(self.fc_c1(x_c))) v_v = v_v.permute(0, 3, 1, 2) if self.padding >=1: v_v = F.pad(v_v, [0, self.padding, 0, self.padding]) v_q = self.fc_c4(F.tanh(self.fc_c3(x_c))) v_q = v_q.permute(0, 3, 1, 2) if self.padding >=1: v_q = F.pad(v_q, [0, self.padding, 0, self.padding]) v_mq = 1 - v_q x_1 = v_0 x_out = x_1.clone() #for i in range(self.layer_num): [x_out,v_v,v_q,x_1,v_mq] = self.net([x_out,v_v,v_q,x_1, v_mq]) if self.padding >=1: x_out = x_out[..., : -self.padding, : -self.padding] x_out = x_out.permute(0, 2, 3, 1) x_out = self.fc1(x_out) x_out = F.leaky_relu(x_out) x_out = self.fc2(x_out)#* self.field.to(x_out.device) if self.add_term == True: #x_out = x_out + field x_out = torch.view_as_real(torch.view_as_complex(field.to(x_out.device))*(1+torch.view_as_complex(x_out))) return x_out def get_grid(self, shape, device,field): batchsize, size_x, size_y = shape[0], shape[1], shape[2] gridx = torch.tensor(np.linspace(0, 1, size_x), dtype=torch.float) gridx = gridx.reshape(1, size_x, 1, 1).repeat([batchsize, 1, size_y, 1]) gridy = torch.tensor(np.linspace(0, 1, size_y), dtype=torch.float) gridy = gridy.reshape(1, 1, size_y, 1).repeat([batchsize, size_x, 1, 1]) #feature = [] gridxy = torch.cat((gridx,gridy), dim=-1).to(device) #feature.append(gridxy) # if self.F_feature == True: # for i in range(-3,4): # feature.append(torch.sin(2**(-i)*gridxy)) # feature.append(torch.cos(2**(-i)*gridxy)) #feature.append(field) return gridxy def training_step(self, batch: torch.Tensor, batch_idx): sos,src,y,index = batch batch_size = sos.shape[0] out = self(sos,src) loss = self.criterion(out, y) self.log("loss", loss, on_epoch=True, prog_bar=True, logger=True) wandb.log({"loss": loss.item()}) return loss def validation_step(self, val_batch: torch.Tensor, batch_idx): sos, src, y, index = val_batch split_index = (index[-1] + index[0])//2 batch_size = sos.shape[0] out = self(sos, src) val_loss = self.criterion_val(out.view(batch_size, -1), y.view(batch_size, -1)) return val_loss # def on_validation_epoch_end(self): # error = self.validation_exp_breast(device = self.device) # #self.log('exp_loss_breast', error.item(), on_epoch=True, prog_bar=True, logger=True) # error = self.validation_exp_arm(device = self.device) # #self.log('exp_loss_arm', error.item(), on_epoch=True, prog_bar=True, logger=True) # error = self.validation_exp_limb(device = self.device) # #self.log('exp_loss_limb', error.item(), on_epoch=True, prog_bar=True, logger=True) def configure_optimizers(self, optimizer=None, scheduler=None): if optimizer is None: optimizer = optim.AdamW(self.parameters(), lr=self.learning_rate, weight_decay=self.weight_decay) if scheduler is None: #scheduler = optim.lr_scheduler.CosineAnnealingLR(optimizer,T_max = self.step_size, eta_min= self.eta_min) scheduler = optim.lr_scheduler.StepLR(optimizer, step_size = 6, gamma = 0.1)# 6 0.5 return { "optimizer": optimizer, "lr_scheduler": { "scheduler": scheduler }, }